Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    18746468 C>T  Pum=0.0  Qui=0.0  Rio=0.543
    18746854 C>T  Pum=0.95  Qui=0.0  Rio=0.522

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0   12.4
Qui1     Qui              0        0    6.9
Qui2     Qui     0.0      3        0   10.7
Qui3     Qui              0        0    9.5
Qui4     Qui              0        0    9.1
Rio1     Rio              0        0   12.2
Rio2     Rio    16.7      6        0   16.3
Rio3     Rio              0        0   14.5
Rio4     Rio              0        0   15.9