Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 15
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 1]
    17952014 A>C  Pum=  Qui=0.0  Rio=0.524
    17952488 T>C  Pum=  Qui=0.0  Rio=0.727
    17952738 A>T  Pum=0.917  Qui=0.0  Rio=0.636
    17952870 C>T  Pum=1.0  Qui=0.0  Rio=0.692
    17952908 T>C  Pum=0.5  Qui=0.0  Rio=0.644
    17952938 T>C  Pum=0.667  Qui=0.0  Rio=0.614
    17952952 A>T  Pum=0.5  Qui=0.0  Rio=0.5

27 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    89.5     19        2    4.3
Qui1     Qui    95.4    108        0    6.3
Qui2     Qui    97.1     69        0    5.2
Qui3     Qui    96.5    114        0    5.4
Qui4     Qui    93.3     60        0    3.6
Rio1     Rio    80.0     45        3    5.0
Rio2     Rio    80.9     68        3    5.1
Rio3     Rio    83.7     43        3    4.7
Rio4     Rio    73.4     64        3    5.1