Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    14390601 C>T  Pum=  Qui=0.667  Rio=0.0
    14390613 C>T  Pum=  Qui=0.688  Rio=0.0
    14390718 C>T  Pum=  Qui=0.6  Rio=0.0
    14390814 T>A  Pum=0.0  Qui=0.773  Rio=0.0

10 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.8     49        1    5.7
Qui1     Qui    73.8     61        2    6.0
Qui2     Qui    74.2     66        0    5.8
Qui3     Qui    68.9     45        2    5.6
Qui4     Qui    57.1     14        2    2.7
Rio1     Rio    92.4     66        0    7.5
Rio2     Rio    91.4     35        0    6.2
Rio3     Rio    93.2     59        0    6.4
Rio4     Rio    98.2     55        0    6.7