Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    22367753 C>T  Pum=0.0  Qui=0.6  Rio=0.1

87 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     23        1    4.0
Qui1     Qui    21.4     14        1    5.0
Qui2     Qui     0.0     10        0    1.8
Qui3     Qui     0.0     29        0    2.0
Qui4     Qui              0        0    1.6
Rio1     Rio              0        0    5.8
Rio2     Rio     0.0      9        0    4.9
Rio3     Rio    50.0     12        0    6.4
Rio4     Rio     0.0     16        0    2.7