Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    108546301 G>T  Pum=  Qui=0.0  Rio=0.5

20 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    63.3     79        0   10.9
Qui1     Qui    96.2     78        0    9.8
Qui2     Qui   100.0     66        0    8.5
Qui3     Qui    98.0     99        0   11.3
Qui4     Qui    93.5     31        0    6.8
Rio1     Rio    31.4    102        0   10.5
Rio2     Rio    55.9     93        0   12.2
Rio3     Rio    96.6     59        0    5.9
Rio4     Rio    61.7    107        0   11.3