Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 40
  seen in >= 2 oysters: 20
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    108544385 T>C  Pum=0.667  Qui=0.0  Rio=0.543

29 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    45.6     68        2   10.6
Qui1     Qui    96.5     86        0    7.9
Qui2     Qui    98.5     66        0    9.5
Qui3     Qui    94.0     84        0    8.6
Qui4     Qui    96.6     58        0    8.2
Rio1     Rio    70.9     55        1   12.9
Rio2     Rio    63.4     71        2   13.3
Rio3     Rio    97.7     44        0    6.3
Rio4     Rio    68.8     93        1   12.0