Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     14        0    6.9
Qui1     Qui     0.0     33        0    4.0
Qui2     Qui     2.6     38        0    7.2
Qui3     Qui     0.0     17        0    7.6
Qui4     Qui     0.0     11        0    3.2
Rio1     Rio     0.0     34        0    5.3
Rio2     Rio    31.7     63        0    6.1
Rio3     Rio    78.0     41        0    9.5
Rio4     Rio    31.0     29        0    6.4