Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 20
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.7     27        1   12.7
Qui1     Qui    16.7     48        0   15.1
Qui2     Qui    10.4     48        0   12.8
Qui3     Qui     1.7     58        1   13.8
Qui4     Qui     2.4     41        0   10.9
Rio1     Rio    53.1     49        1   13.5
Rio2     Rio    71.6     67        1   12.9
Rio3     Rio    59.5     37        1    7.7
Rio4     Rio    35.5     62        0   13.6