Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    41.3     46        0    7.5
Qui1     Qui     0.0     48        0    5.9
Qui2     Qui    33.3     15        0    5.9
Qui3     Qui    44.7     38        0    6.2
Qui4     Qui    53.3     30        0    8.5
Rio1     Rio    74.3     35        0    9.2
Rio2     Rio    87.0     23        0    5.4
Rio3     Rio    91.3     23        0    5.4
Rio4     Rio    86.7     30        0    5.8