Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    77398767 G>T  Pum=1.0  Qui=0.469  Rio=1.0

18 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.7     34        0    4.7
Qui1     Qui    51.2     41        0    5.8
Qui2     Qui    56.7     67        0    9.0
Qui3     Qui    51.4     74        0    9.0
Qui4     Qui    85.9     64        0    5.7
Rio1     Rio     0.0     21        0    3.1
Rio2     Rio     0.0     29        0    4.7
Rio3     Rio     7.1     28        0    3.8
Rio4     Rio    16.3     49        0    5.0