Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    77389729 T>A  Pum=0.5  Qui=0.048  Rio=0.556

26 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0     30        0    2.4
Qui1     Qui    79.7     59        0    4.8
Qui2     Qui    82.8     64        0    3.3
Qui3     Qui    82.5     57        0    4.1
Qui4     Qui    74.5     98        0    5.8
Rio1     Rio    22.2     27        0    2.0
Rio2     Rio     2.9     34        0    1.7
Rio3     Rio     0.0     21        0    1.1
Rio4     Rio     0.0     36        0    2.5