Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    77383767 T>A  Pum=0.0  Qui=0.324  Rio=0.968

23 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     22        0    6.8
Qui1     Qui    45.3     64        0    8.6
Qui2     Qui    27.3     33        0    7.8
Qui3     Qui    66.2     68        0    9.6
Qui4     Qui    90.4     52        0    7.4
Rio1     Rio     1.6     62        0    7.9
Rio2     Rio     0.0     45        0   10.1
Rio3     Rio     9.3     43        0    5.7
Rio4     Rio    10.0     30        0    8.2