Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    21707145 T>C  Pum=1.0  Qui=0.1  Rio=0.697
    21707179 T>A  Pum=1.0  Qui=0.148  Rio=0.697
    21707758 G>A  Pum=  Qui=0.231  Rio=0.889
    21707779 G>A  Pum=  Qui=0.0  Rio=0.889
    21707994 T>A  Pum=1.0  Qui=0.227  Rio=0.812

17 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     27        0    7.1
Qui1     Qui    44.4     27        0    6.5
Qui2     Qui    38.9     54        0    6.2
Qui3     Qui    25.0     28        0    5.7
Qui4     Qui     0.0     18        0    4.6
Rio1     Rio     0.0     20        0    3.9
Rio2     Rio     0.0     16        0    6.3
Rio3     Rio     7.1     14        0    5.9
Rio4     Rio     4.3     23        0    8.3