Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 52
  seen in >= 2 oysters: 14
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 10  [CpG-destroying: 2]
    71045181 G>T  Pum=  Qui=0.5  Rio=0.0
    71045560 T>A  Pum=0.0  Qui=0.5  Rio=0.0
    71045616 T>A  Pum=0.0  Qui=0.593  Rio=0.0
    71045645 C>T  Pum=0.0  Qui=0.737  Rio=0.0
    71045656 A>T  Pum=0.071  Qui=0.655  Rio=0.0
    71045667 A>T  Pum=0.071  Qui=0.667  Rio=0.0
    71045698 C>T  Pum=0.0  Qui=0.826  Rio=0.0
    71045742 T>A  Pum=0.077  Qui=0.75  Rio=0.0
    71045785 A>G  Pum=0.071  Qui=0.636  Rio=0.0
    71045907 A>T  Pum=0.0  Qui=0.577  Rio=0.0

13 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.7     49        0    9.1
Qui1     Qui    77.8     27        0    6.0
Qui2     Qui    60.0     10        0    4.7
Qui3     Qui    75.0     28        0    7.1
Qui4     Qui    86.7     15        0    4.7
Rio1     Rio    84.6     13        0    8.8
Rio2     Rio    95.5     22        0    6.0
Rio3     Rio    92.9     14        0    5.0
Rio4     Rio    88.5     26        0    7.1