Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 18
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    64.2     53        0   12.0
Qui1     Qui    23.8     63        0    8.7
Qui2     Qui    21.4     42        1    8.6
Qui3     Qui    38.2     34        1   10.6
Qui4     Qui    34.6     26        1    6.6
Rio1     Rio    60.7     61        1   10.4
Rio2     Rio    74.5     47        0   10.8
Rio3     Rio    75.0     40        1   10.9
Rio4     Rio    41.9     31        0   10.9