Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    71.0     31        0    5.7
Qui1     Qui    27.8     18        0    8.2
Qui2     Qui    25.0     20        1    6.0
Qui3     Qui    36.5     52        0   11.0
Qui4     Qui    55.6      9        1    8.0
Rio1     Rio    66.7     39        0   10.9
Rio2     Rio    53.3     30        0    8.3
Rio3     Rio    72.7     33        0    8.2
Rio4     Rio    56.7     30        0    9.2