Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    85984694 C>T  Pum=  Qui=0.706  Rio=0.048
    85984759 C>T  Pum=1.0  Qui=0.778  Rio=0.048
    85984831 T>A  Pum=1.0  Qui=0.659  Rio=0.118

6 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    38.5     26        2    8.3
Qui1     Qui    89.5     19        2    5.9
Qui2     Qui    63.3     30        2    8.0
Qui3     Qui    77.1     48        1   11.0
Qui4     Qui    48.0     25        1    7.9
Rio1     Rio    69.7     33        1    8.4
Rio2     Rio    78.4     37        0    9.4
Rio3     Rio    81.0     21        0    6.4
Rio4     Rio    85.7     28        0    5.3