Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 52
  seen in >= 2 oysters: 23
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    77423401 C>A  Pum=0.333  Qui=0.75  Rio=0.053

20 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    41.6    154        1   16.1
Qui1     Qui    57.2    159        0   14.1
Qui2     Qui    51.6    184        0   17.3
Qui3     Qui    74.6    114        1    9.3
Qui4     Qui    39.9    173        0   15.7
Rio1     Rio    74.8    135        0   10.6
Rio2     Rio    77.8     72        0    7.8
Rio3     Rio    61.4     57        1    6.4
Rio4     Rio    71.6    116        0   10.8