Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    39.0    141        1   11.5
Qui1     Qui    55.7    210        1   17.3
Qui2     Qui    70.3    158        1   13.8
Qui3     Qui    42.3    156        0   15.7
Qui4     Qui    35.7     84        0    8.0
Rio1     Rio    26.9    130        0   14.0
Rio2     Rio    20.3    118        0   13.3
Rio3     Rio    31.2    125        0   12.3
Rio4     Rio    21.1    109        1   11.2