Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    90324007 A>C  Pum=0.778  Qui=0.682  Rio=0.059

9 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    47.6     21        0    6.6
Qui1     Qui    64.1     39        0    7.2
Qui2     Qui    50.0     22        0    6.3
Qui3     Qui    68.0     25        0    7.3
Qui4     Qui    58.3     12        0    3.8
Rio1     Rio    72.2     18        0    6.9
Rio2     Rio    80.0     35        0    6.7
Rio3     Rio    97.2     36        0    5.1
Rio4     Rio    85.7      7        0    6.0