Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 38
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    35003018 C>T  Pum=  Qui=0.917  Rio=0.3
    35003426 C>A  Pum=  Qui=0.842  Rio=0.067
    35003614 G>A  Pum=0.455  Qui=0.857  Rio=0.273
    35003627 C>A  Pum=  Qui=0.75  Rio=0.067

9 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.4     56        0   11.2
Qui1     Qui    30.4     23        0    7.7
Qui2     Qui    35.1     37        0    9.0
Qui3     Qui    31.1     45        1   10.2
Qui4     Qui    23.5     17        1    6.6
Rio1     Rio    66.1     59        0   10.8
Rio2     Rio    59.7     62        1   11.5
Rio3     Rio    41.4     29        0    8.3
Rio4     Rio    63.6     33        1    6.8