pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 25014012 A G True 4 0.3 0.071 0.231 False False 0.30/10 0.25/4 0.11/9 0.08/13 0.00/16 0.38/8 0.50/4 0.00/6 0.12/8 25014050 G T True 1 1.0 0.714 1.0 False False 1.00/4 1.00/1 0.67/3 1.00/1 0.50/2 1.00/3 1.00/2 1.00/1 1.00/1 25014058 T C True 1 0.0 0.0 0.031 False False 0.00/8 0.00/4 0.00/12 0.00/12 0.00/12 0.00/11 0.25/4 0.00/9 0.00/8 25014059 C T True 7 1.0 0.469 0.96 False True 1.00/4 1.00/2 0.44/9 0.55/11 0.30/10 1.00/8 0.50/2 1.00/8 1.00/7 25014072 T G True 1 0.0 0.024 0.031 False False 0.00/7 0.00/4 0.08/12 0.00/14 0.00/12 0.00/11 0.25/4 0.00/9 0.00/8 25014076 T G True 1 0.0 0.0 0.032 False False 0.00/6 0.00/4 0.00/12 0.00/13 0.00/12 0.00/11 0.25/4 0.00/9 0.00/7 25014078 A G True 1 0.0 0.0 0.032 False False 0.00/6 0.00/4 0.00/12 0.00/13 0.00/12 0.00/11 0.25/4 0.00/9 0.00/7 25014079 T A True 1 0.0 0.0 0.033 False False 0.00/6 0.00/4 0.00/12 0.00/13 0.00/12 0.00/11 0.25/4 0.00/8 0.00/7 25014135 C T True 6 0.448 0.962 True True 1.00/2 1.00/2 0.33/9 0.58/12 0.17/6 1.00/8 0.80/5 1.00/7 1.00/6 25014138 G A True 0 0.6 False True 1.00/1 0.67/3 0.00/1 1.00/1 1.00/1 1.00/1 25014204 A C True 5 0.35 0.895 True False 0.00/1 1.00/1 0.14/7 0.67/6 0.17/6 1.00/5 0.60/5 1.00/5 1.00/4 25014264 T A True 1 0.231 0.357 False False 0.33/3 0.29/7 0.33/3 0.00/3 0.67/3 0.12/8 1.00/2 0.00/1 25014265 C A True 2 0.333 0.667 False False 1.00/1 0.40/5 0.33/3 0.00/1 1.00/2 0.40/5 1.00/2 25014278 T C True 1 0.25 0.0 0.0 False False 0.25/4 0.00/7 0.00/3 0.00/4 0.00/4 0.00/9 0.00/3 0.00/2 25014280 C A True 1 0.333 0.273 False False 1.00/2 0.25/4 0.33/3 0.50/2 0.50/2 0.17/6 0.33/3 25014296 T G True 5 1.0 0.4 0.562 False False 1.00/4 1.00/1 0.40/5 0.20/5 0.50/4 1.00/4 0.25/8 0.50/2 1.00/2 25014306 T C True 1 0.0 0.067 0.0 False False 0.00/4 0.00/1 0.00/5 0.00/5 0.25/4 0.00/4 0.00/7 0.00/2 0.00/2 25014321 C A True 1 0.455 0.5 False False 1.00/2 1.00/1 0.33/3 0.40/5 0.50/2 1.00/2 0.20/5 1.00/1 25014322 A G True 2 0.5 0.125 0.4 False False 0.50/4 0.00/1 0.20/5 0.00/5 0.20/5 0.60/5 0.14/7 0.00/1 1.00/2 25014367 A G True 1 0.0 0.0 0.05 False False 0.00/4 0.00/3 0.00/5 0.00/7 0.00/6 0.00/5 0.00/7 0.25/4 0.00/4 25014370 T A True 1 0.0 0.043 0.0 False False 0.00/5 0.25/4 0.00/6 0.00/7 0.00/6 0.00/5 0.00/7 0.00/4 0.00/4 25014371 G A True 0 0.5 0.889 False True 0.67/3 1.00/2 0.67/3 0.00/2 0.33/3 1.00/3 0.50/2 1.00/2 1.00/2 25014410 T C True 1 0.0 0.05 0.0 False False 0.00/4 0.00/4 0.25/4 0.00/6 0.00/6 0.00/6 0.00/7 0.00/6 0.00/3 25014414 C T True 2 0.545 0.727 False True 1.00/2 1.00/2 0.50/2 0.25/4 0.67/3 1.00/3 0.25/4 1.00/2 1.00/2 25014415 A G True 7 0.667 0.261 0.435 False False 0.67/6 0.50/4 0.40/5 0.00/8 0.33/6 0.50/6 0.25/8 0.67/6 0.33/3 25014429 C T True 2 0.545 0.75 False True 1.00/2 1.00/2 0.50/2 0.25/4 0.67/3 1.00/3 0.25/4 1.00/2 1.00/3 25014446 G T True 6 1.0 0.467 0.929 False False 1.00/5 1.00/4 0.75/4 0.00/5 0.00/2 1.00/4 0.75/4 1.00/5 1.00/1 25014508 G A True 6 1.0 0.6 0.947 False True 1.00/7 1.00/4 0.75/4 0.20/5 0.50/2 1.00/7 0.83/6 1.00/5 1.00/1 25014511 C T True 1 0.778 0.833 False True 1.00/2 1.00/1 1.00/2 0.50/2 0.75/4 1.00/1 0.00/1 1.00/2 1.00/2 25014513 G A True 6 1.0 0.6 0.895 False True 1.00/7 1.00/4 0.75/4 0.20/5 0.50/2 0.86/7 0.83/6 1.00/5 1.00/1 25014559 G A True 8 1.0 0.706 0.966 False True 1.00/5 1.00/4 0.80/5 0.50/4 0.50/4 1.00/12 0.88/8 1.00/3 1.00/6 25014588 C T True 2 0.455 0.714 False True 1.00/1 0.00/1 0.50/4 0.40/5 0.00/2 1.00/3 1.00/2 25014617 A G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/5 0.00/8 0.00/11 0.00/11 0.00/12 0.00/7 0.00/7 0.00/10 25014661 A G True 9 0.875 0.463 0.75 False False 0.88/8 0.78/9 0.57/7 0.40/10 0.27/15 0.92/12 0.62/8 0.60/5 0.73/11 25014691 G C True 1 0.0 0.0 0.04 False False 0.00/8 0.00/6 0.00/6 0.00/5 0.00/7 0.00/9 0.25/4 0.00/3 0.00/9 25014696 A T True 8 1.0 0.583 0.967 False False 1.00/9 1.00/8 0.50/6 0.30/10 0.58/12 1.00/9 0.67/3 1.00/5 1.00/13 25014707 A T True 8 1.0 0.583 1.0 False False 1.00/9 1.00/9 0.50/6 0.33/9 0.50/12 1.00/9 1.00/3 1.00/5 1.00/14 25014764 A T True 1 0.0 0.0 0.038 False False 0.00/9 0.00/8 0.00/5 0.00/5 0.00/11 0.00/8 0.25/4 0.00/1 0.00/13 25014800 T A True 1 0.0 0.0 0.05 False False 0.00/7 0.00/7 0.00/5 0.00/6 0.00/12 0.00/5 0.00/3 0.25/4 0.00/8 25014827 G C True 1 0.0 0.091 False False 0.00/3 0.00/3 0.00/3 0.00/1 0.00/4 0.25/4 0.00/1 0.00/4 0.00/2 25014828 G T True 1 0.0 0.091 False False 0.00/3 0.00/3 0.00/3 0.00/1 0.00/4 0.25/4 0.00/1 0.00/4 0.00/2 25014870 A G True 1 0.0 0.048 0.077 False False 0.00/5 0.00/2 0.20/5 0.00/4 0.00/10 0.00/3 0.00/2 0.25/4 0.00/4 25014892 G C True 1 0.333 0.0 False False 0.00/2 1.00/1 0.00/1 0.25/4 0.00/1 0.00/3 0.00/1 25014910 G T True 0 0.25 0.0 False False 0.00/1 0.33/3 0.00/1 0.00/2 0.00/1 25014984 T G True 1 0.0 0.1 False False 0.00/1 0.00/2 0.00/1 0.00/5 0.00/2 0.25/4 0.00/1 0.00/2 0.00/3 25014986 T A True 1 0.111 0.1 False False 0.00/1 0.00/2 0.00/1 0.20/5 0.00/1 0.25/4 0.00/1 0.00/2 0.00/3 25014991 C A True 1 0.125 0.0 False False 0.00/1 0.00/2 0.00/1 0.25/4 0.00/1 0.00/4 0.00/2 0.00/3 25014992 C A True 1 0.125 0.0 False False 0.00/1 0.00/2 0.00/1 0.25/4 0.00/1 0.00/4 0.00/3 0.00/3