Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 16
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 12  [CpG-destroying: 4]
    74311005 G>A  Pum=0.0  Qui=0.6  Rio=0.0
    74311055 G>T  Pum=0.0  Qui=0.75  Rio=0.0
    74311069 T>A  Pum=0.0  Qui=0.577  Rio=0.0
    74311502 A>T  Pum=0.143  Qui=0.759  Rio=0.0
    74311564 A>G  Pum=0.0  Qui=0.704  Rio=0.0
    74311568 A>G  Pum=0.0  Qui=0.538  Rio=0.0
    74311608 G>T  Pum=0.0  Qui=0.706  Rio=0.0
    74311620 A>T  Pum=0.0  Qui=0.696  Rio=0.0
    74311766 G>A  Pum=0.0  Qui=0.6  Rio=0.0
    74311880 C>T  Pum=  Qui=0.714  Rio=0.0
    74311908 C>A  Pum=  Qui=0.706  Rio=0.0
    74311915 G>A  Pum=0.0  Qui=0.545  Rio=0.0

9 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    95.9     49        0    6.9
Qui1     Qui    78.8     33        0    6.5
Qui2     Qui    66.7     18        1    5.3
Qui3     Qui    77.3     44        1    7.5
Qui4     Qui    82.5     63        0    7.2
Rio1     Rio    91.4     35        0   10.1
Rio2     Rio    91.9     62        0   10.0
Rio3     Rio    82.8     29        0    5.9
Rio4     Rio    93.9     33        0    8.8