Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 3
  differ between populations (pooled alt-frequency difference >= 0.5): 4
    132143056 A>T  Pum=0.0  Qui=0.0  Rio=0.805
    132143374 C>A  Pum=  Qui=0.0  Rio=1.0
    132143382 A>T  Pum=0.0  Qui=0.0  Rio=0.862
    132143500 C>A  Pum=  Qui=0.0  Rio=1.0

20 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.7     70        0    5.7
Qui1     Qui    85.3     95        0    7.9
Qui2     Qui    96.2    105        0    8.0
Qui3     Qui    95.6     90        0    8.0
Qui4     Qui    90.3     72        0    6.9
Rio1     Rio     0.0    106        0    8.0
Rio2     Rio     0.0     76        0    7.4
Rio3     Rio    50.0     60        1    5.0
Rio4     Rio     1.0    102        0    8.8