Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 1
  differ between populations (pooled alt-frequency difference >= 0.5): 3
    132109239 G>T  Pum=0.143  Qui=0.0  Rio=0.6
    132109482 G>T  Pum=0.5  Qui=0.0  Rio=0.0
    132109935 T>A  Pum=0.0  Qui=0.0  Rio=0.933

16 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    13.2     91        0   10.5
Qui1     Qui    16.3     43        0    6.5
Qui2     Qui    39.4     66        0    8.5
Qui3     Qui     7.4     68        0    9.0
Qui4     Qui    15.8     57        0    7.5
Rio1     Rio    78.1     32        0    6.8
Rio2     Rio    80.0     25        0    7.0
Rio3     Rio    22.2     54        0    7.2
Rio4     Rio    66.7     27        0    7.5