Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 14
  differ between populations (pooled alt-frequency difference >= 0.5): 11
    131474046 C>T  Pum=0.0  Qui=0.733  Rio=0.0
    131474089 T>C  Pum=0.962  Qui=0.809  Rio=0.0
    131474220 C>T  Pum=0.167  Qui=0.833  Rio=0.0
    131474239 C>T  Pum=0.2  Qui=0.81  Rio=0.0
    131474276 G>T  Pum=0.143  Qui=0.81  Rio=0.0
    131474457 C>T  Pum=  Qui=1.0  Rio=0.0
    131474506 A>T  Pum=0.0  Qui=0.821  Rio=0.0
    131474878 C>T  Pum=  Qui=0.929  Rio=0.0
    131474902 T>A  Pum=0.0  Qui=0.88  Rio=0.042
    131474903 C>T  Pum=  Qui=0.923  Rio=0.0
    131474910 A>T  Pum=0.0  Qui=0.889  Rio=0.0

8 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.5     42        0   10.0
Qui1     Qui    71.0     31        4    8.1
Qui2     Qui    25.0     20        3    5.9
Qui3     Qui    41.4     58        4   11.2
Qui4     Qui    75.7     37        2    6.8
Rio1     Rio    95.5     22        0    8.8
Rio2     Rio    96.2     26        0    8.0
Rio3     Rio    85.7     28        0    7.7
Rio4     Rio    96.7     30        0   10.7