Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    131470052 C>T  Pum=0.0  Qui=0.952  Rio=0.0
    131470721 T>G  Pum=0.0  Qui=0.714  Rio=0.0
    131470741 C>T  Pum=0.0  Qui=0.909  Rio=0.0
    131470803 A>G  Pum=0.538  Qui=0.652  Rio=0.0
    131470932 T>C  Pum=1.0  Qui=0.635  Rio=0.0

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     41        0   12.2
Qui1     Qui    66.0     53        2   10.2
Qui2     Qui    52.3     65        2   12.6
Qui3     Qui    59.7     72        1   13.1
Qui4     Qui    86.7     45        0    8.8
Rio1     Rio    95.7     46        0    9.3
Rio2     Rio    93.5     46        0    9.7
Rio3     Rio   100.0     42        0    8.4
Rio4     Rio    95.2     63        0   10.9