Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 14
  differ between populations (pooled alt-frequency difference >= 0.5): 16
    130722023 T>C  Pum=0.0  Qui=0.962  Rio=0.0
    130722068 A>G  Pum=0.0  Qui=0.84  Rio=0.0
    130722344 C>T  Pum=  Qui=1.0  Rio=0.0
    130722483 C>A  Pum=0.0  Qui=1.0  Rio=0.0
    130722489 T>A  Pum=0.0  Qui=0.978  Rio=0.0
    130722493 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130722529 T>C  Pum=0.0  Qui=0.533  Rio=0.0
    130722532 T>A  Pum=0.0  Qui=1.0  Rio=0.0
    130722553 A>T  Pum=0.0  Qui=0.959  Rio=0.0
    130722564 A>T  Pum=0.0  Qui=0.978  Rio=0.0
    130722584 C>T  Pum=0.0  Qui=1.0  Rio=0.0
    130722585 C>A  Pum=0.0  Qui=1.0  Rio=0.0
    130722607 G>A  Pum=  Qui=1.0  Rio=0.0
    130722714 T>A  Pum=0.0  Qui=0.6  Rio=0.0
    130722718 G>T  Pum=  Qui=0.5  Rio=0.0
    130722746 G>A  Pum=  Qui=1.0  Rio=0.0

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    94.8     58        0    6.7
Qui1     Qui    82.4     85        0    9.4
Qui2     Qui    82.5     57        0    7.6
Qui3     Qui    75.4     61        0    7.4
Qui4     Qui    79.2     48        0    7.0
Rio1     Rio    98.3     60        0    6.5
Rio2     Rio    95.8     71        0    8.4
Rio3     Rio    97.0     67        0    7.8
Rio4     Rio    90.5     74        0    7.6