Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 19
  seen in >= 2 oysters: 3
  differ between populations (pooled alt-frequency difference >= 0.5): 4
    130689314 G>A  Pum=  Qui=1.0  Rio=0.0
    130689520 C>T  Pum=0.0  Qui=1.0  Rio=0.0
    130689662 G>T  Pum=0.0  Qui=1.0  Rio=0.0
    130689758 G>A  Pum=0.0  Qui=1.0  Rio=0.0

7 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.7     12        0    6.2
Qui1     Qui    85.7     14        0    5.9
Qui2     Qui    60.0     10        0    8.3
Qui3     Qui    88.9     18        0    8.1
Qui4     Qui    60.0     15        0    7.1
Rio1     Rio    94.7     19        0   10.2
Rio2     Rio    91.7     24        0   10.8
Rio3     Rio    94.4     18        0    6.8
Rio4     Rio    87.5     16        0    9.7