Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 10
  differ between populations (pooled alt-frequency difference >= 0.5): 11
    130653089 C>T  Pum=  Qui=1.0  Rio=0.0
    130653091 C>T  Pum=  Qui=1.0  Rio=0.0
    130653195 C>T  Pum=  Qui=1.0  Rio=0.0
    130653224 G>A  Pum=  Qui=1.0  Rio=0.0
    130653377 A>G  Pum=0.125  Qui=0.972  Rio=0.0
    130653505 T>A  Pum=0.2  Qui=1.0  Rio=0.0
    130653583 C>T  Pum=0.5  Qui=1.0  Rio=0.0
    130653631 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130653653 A>G  Pum=0.111  Qui=0.933  Rio=0.0
    130653840 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130653912 G>A  Pum=0.0  Qui=1.0  Rio=0.0

16 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    98.8     81        1    7.4
Qui1     Qui    70.2     84        2    8.4
Qui2     Qui    68.2     66        1    7.1
Qui3     Qui    74.8    103        3   11.9
Qui4     Qui    70.9     55        1    6.4
Rio1     Rio    94.9     79        0   10.4
Rio2     Rio    97.3     75        0    7.7
Rio3     Rio    88.0     50        0    6.0
Rio4     Rio    96.8     94        0   10.6