Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 26
  seen in >= 2 oysters: 7
  differ between populations (pooled alt-frequency difference >= 0.5): 8
    130641081 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130641174 T>C  Pum=0.0  Qui=0.575  Rio=0.028
    130641236 T>A  Pum=0.0  Qui=1.0  Rio=0.0
    130641238 G>A  Pum=  Qui=1.0  Rio=0.0
    130641271 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130641338 G>A  Pum=0.0  Qui=1.0  Rio=0.0
    130641581 C>A  Pum=0.0  Qui=1.0  Rio=0.0
    130641983 C>A  Pum=  Qui=0.929  Rio=0.071

7 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    77.1     35        0   10.4
Qui1     Qui    66.7     33        0    6.8
Qui2     Qui    43.3     30        0    8.8
Qui3     Qui    48.3     29        0    9.4
Qui4     Qui    36.4     22        0    6.4
Rio1     Rio    89.7     39        0    9.3
Rio2     Rio    87.2     39        0    9.8
Rio3     Rio    80.0     25        0    7.6
Rio4     Rio    93.9     33        0    8.9