Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     49        0    8.2
Qui1     Qui     0.0     40        0   10.3
Qui2     Qui     0.0     25        0    5.0
Qui3     Qui     0.0     43        0    9.9
Qui4     Qui     0.0     20        0    8.0
Rio1     Rio     7.5     67        0    7.3
Rio2     Rio    35.0     60        0    8.9
Rio3     Rio    49.0     51        0    9.0
Rio4     Rio    26.8     56        0    8.4