[2026-10-10 12:18:53,257] root [DEBUG ] Logging to file: /tmp/tmpxx69qxm2/multiqc.log [2026-10-10 12:18:53,260] multiqc.core.update_config [DEBUG ] This is MultiQC v1.30 [2026-10-10 12:18:53,260] multiqc.core.update_config [DEBUG ] Running Python 3.13.5 | packaged by conda-forge | (main, Jun 16 2025, 08:27:50) [GCC 13.3.0] [2026-10-10 12:18:53,288] urllib3.connectionpool [DEBUG ] Starting new HTTPS connection (1): api.multiqc.info:443 [2026-10-10 12:18:53,971] urllib3.connectionpool [DEBUG ] https://api.multiqc.info:443 "GET /version?version_multiqc=1.30&version_python=3.13.5&operating_system=Linux&is_docker=False&is_singularity=True&is_conda=True&is_ci=False&is_notebook=False&ai_summary=False&ai_summary_full=False HTTP/1.1" 200 178 [2026-10-10 12:18:53,972] multiqc.core.version_check [WARNING] MultiQC Version v1.35 now available! [2026-10-10 12:18:53,972] multiqc.core.version_check [DEBUG ] Latest MultiQC version is v1.35, released 2026-05-13 [2026-10-10 12:18:53,973] multiqc.multiqc [DEBUG ] Working dir : /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil [2026-10-10 12:18:53,974] multiqc.multiqc [DEBUG ] Template : default [2026-10-10 12:18:53,974] multiqc.multiqc [DEBUG ] Command used: /mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/multiqc --force --filename multiqc_13-wgbs --outdir output/13-wgbs-hapa/reports output/13-wgbs-hapa/fastp output/13-wgbs-hapa/bismark output/13-wgbs-hapa/dedup output/13-wgbs-hapa/methylation [2026-10-10 12:18:53,974] multiqc.core.file_search [INFO ] Search path: /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/fastp [2026-10-10 12:18:53,974] multiqc.core.file_search [INFO ] Search path: /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/bismark [2026-10-10 12:18:53,974] multiqc.core.file_search [INFO ] Search path: /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/dedup [2026-10-10 12:18:53,974] multiqc.core.file_search [INFO ] Search path: /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/methylation [2026-10-10 12:18:53,975] multiqc.core.file_search [DEBUG ] Analysing modules: bases2fastq, cellranger_arc, cells2stats, custom_content, ccs, ngsderive, purple, conpair, isoseq, lima, peddy, percolator, haplocheck, somalier, methylqa, mosdepth, phantompeakqualtools, qualimap, bamdst, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, checkm, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, glimpse, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featurecounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, mapdamage, biobambam2, jcvi, mtnucratio, picard, vep, bakta, prokka, checkm2, qc3C, nanoq, nanostat, samblaster, samtools, bamtools, sambamba, ngsbits, pairtools, sexdeterrmine, seqera_cli, eigenstratdatabasetools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umicollapse, umitools, truvari, megahit, ganon, gtdbtk, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, hostile, cellranger, snpsplit, odgi, vg, pangolin, nextclade, freyja, humid, kat, leehom, librarian, nonpareil, adapterremoval, bbduk, clipandmerge, cutadapt, flexbar, sourmash, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, sequali, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap, spaceranger, xenome, xengsort, metaphlan, seqwho, telseq, ataqv, mgikit, mosaicatcher, software_versions [2026-10-10 12:18:53,975] multiqc.core.file_search [DEBUG ] Search keys: adapterremoval, afterqc, anglerfish, ataqv, bakta, bamdst, bamtools, bases2fastq, bbduk, bbmap, bcftools, bcl2fastq, bclconvert, biobambam2, biobloomtools, biscuit, bismark, bowtie1, bowtie2, busco, bustools, ccs, cellranger, cellranger_arc, cells2stats, checkm, checkm2, checkqc, clipandmerge, clusterflow, conpair, custom_content, cutadapt, damageprofiler, dedup, deeptools, diamond, disambiguate, dragen, dragen_fastqc, eigenstratdatabasetools, fastp, fastq_screen, fastqc, featurecounts, fgbio, filtlong, flash, flexbar, freyja, ganon, gatk, gffcompare, glimpse, goleft_indexcov, gopeaks, gtdbtk, haplocheck, happy, hicexplorer, hicpro, hicup, hifiasm, hisat2, homer, hops, hostile, htseq, humid, interop, isoseq, ivar, jcvi, jellyfish, kaiju, kallisto, kat, kraken, leehom, librarian, lima, longranger, macs2, malt, mapdamage, megahit, metaphlan, methylqa, mgikit, minionqc, mirtop, mirtrace, mosaicatcher, mosdepth, motus, mtnucratio, multiqc_data, multivcfanalyzer, nanoq, nanostat, nextclade, ngsbits, ngsderive, nonpareil, odgi, optitype, pairtools, pangolin, pbmarkdup, peddy, percolator, phantompeakqualtools, picard, porechop, preseq, prinseqplusplus, prokka, purple, pychopper, pycoqc, qc3C, qorts, qualimap, quast, rna_seqc, rockhopper, rsem, rseqc, salmon, sambamba, samblaster, samtools, sargasso, seqera_cli, sequali, seqwho, seqyclean, sexdeterrmine, sickle, skewer, slamdunk, snippy, snpeff, snpsplit, software_versions, somalier, sortmerna, sourmash, spaceranger, stacks, star, supernova, telseq, theta2, tophat, trimmomatic, truvari, umicollapse, umitools, varscan2, vcftools, vep, verifybamid, vg, whatshap, xengsort, xenome [2026-10-10 12:18:54,759] multiqc.report [DEBUG ] Summary of files that were skipped by the search: |skipped_ignore_pattern: 9|, |skipped_filesize_limit: 72|, |skipped_module_specific_max_filesize: 36|, |skipped_no_match: 99| [2026-10-10 12:18:54,763] multiqc.core.exec_modules [DEBUG ] Running module: custom_content [2026-10-10 12:18:54,775] multiqc.core.exec_modules [DEBUG ] No samples found: custom_content [2026-10-10 12:18:54,775] multiqc.core.exec_modules [DEBUG ] Running module: bismark [2026-10-10 12:18:54,822] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_alignment.txt [2026-10-10 12:18:54,841] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_alignment.json [2026-10-10 12:18:54,842] multiqc.modules.bismark.bismark [INFO ] Found 9 alignment reports [2026-10-10 12:18:54,843] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_alignment: found old_data = False [2026-10-10 12:18:54,843] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_alignment: no old data or empty, using new data only [2026-10-10 12:18:55,319] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_dedup.txt [2026-10-10 12:18:55,320] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_dedup.json [2026-10-10 12:18:55,320] multiqc.modules.bismark.bismark [INFO ] Found 9 dedup reports [2026-10-10 12:18:55,321] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_deduplication: found old_data = False [2026-10-10 12:18:55,321] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_deduplication: no old data or empty, using new data only [2026-10-10 12:18:55,341] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_strand_alignment: found old_data = False [2026-10-10 12:18:55,341] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_strand_alignment: no old data or empty, using new data only [2026-10-10 12:18:55,351] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_methextract.txt [2026-10-10 12:18:55,352] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_methextract.json [2026-10-10 12:18:55,352] multiqc.modules.bismark.bismark [INFO ] Found 9 methextract reports [2026-10-10 12:18:55,352] multiqc.plots.table_object [DEBUG ] Table key 'percent_chg_meth' not found in data for 'bismark-methylation-dp'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,352] multiqc.plots.table_object [DEBUG ] Table key 'percent_chh_meth' not found in data for 'bismark-methylation-dp'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,353] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark-methylation-dp: found old_data = False [2026-10-10 12:18:55,353] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark-methylation-dp: no old data or empty, using new data only [2026-10-10 12:18:55,391] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_mbias: found old_data = False [2026-10-10 12:18:55,391] multiqc.plots.plot [DEBUG ] merge_with_previous for bismark_mbias: no old data or empty, using new data only [2026-10-10 12:18:55,414] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_bam2nuc.txt [2026-10-10 12:18:55,415] multiqc.report [DEBUG ] Wrote data file multiqc_bismark_bam2nuc.json [2026-10-10 12:18:55,415] multiqc.modules.bismark.bismark [INFO ] Found 9 bismark bam2nuc reports [2026-10-10 12:18:55,415] multiqc.base_module [DEBUG ] bismark: deleting attribute self.bismark_data [2026-10-10 12:18:55,415] multiqc.base_module [DEBUG ] bismark: deleting attribute self.bismark_mbias_data [2026-10-10 12:18:55,415] multiqc.core.exec_modules [DEBUG ] Running module: fastp [2026-10-10 12:18:55,458] multiqc.modules.fastp.fastp [INFO ] Found 9 reports [2026-10-10 12:18:55,458] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: PUM1 (paired)_R1 [2026-10-10 12:18:55,458] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: PUM1 (paired)_R1 [2026-10-10 12:18:55,458] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: PUM1 (paired)_R1 [2026-10-10 12:18:55,458] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: PUM1 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: Qui1 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: Qui1 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: Qui1 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: Qui1 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: Qui2 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: Qui2 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: Qui2 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: Qui2 (paired)_R1 [2026-10-10 12:18:55,459] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: Qui3 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: Qui3 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: Qui3 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: Qui3 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: Qui4 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: Qui4 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: Qui4 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: Qui4 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: RP1 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: RP1 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: RP1 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: RP1 (paired)_R1 [2026-10-10 12:18:55,460] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: RP2 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: RP2 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: RP2 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: RP2 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: RP3 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: RP3 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: RP3 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: RP3 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: RP4 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Read quality merged_and_filtered not found: RP4 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Content curve data merged_and_filtered not found: RP4 (paired)_R1 [2026-10-10 12:18:55,461] multiqc.modules.fastp.fastp [DEBUG ] Overrepresented sequences data merged_and_filtered not found: RP4 (paired)_R1 [2026-10-10 12:18:55,476] multiqc.report [DEBUG ] Wrote data file multiqc_fastp.txt [2026-10-10 12:18:55,544] multiqc.report [DEBUG ] Wrote data file multiqc_fastp.json [2026-10-10 12:18:55,545] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_filtered_reads_plot: found old_data = False [2026-10-10 12:18:55,545] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_filtered_reads_plot: no old data or empty, using new data only [2026-10-10 12:18:55,557] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-duprates-plot: found old_data = False [2026-10-10 12:18:55,557] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-duprates-plot: no old data or empty, using new data only [2026-10-10 12:18:55,606] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-insert-size-plot: found old_data = False [2026-10-10 12:18:55,606] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-insert-size-plot: no old data or empty, using new data only [2026-10-10 12:18:55,630] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-quality-plot: found old_data = False [2026-10-10 12:18:55,630] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-quality-plot: no old data or empty, using new data only [2026-10-10 12:18:55,659] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-content-gc-plot: found old_data = False [2026-10-10 12:18:55,659] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-content-gc-plot: no old data or empty, using new data only [2026-10-10 12:18:55,692] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-content-n-plot: found old_data = False [2026-10-10 12:18:55,693] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp-seq-content-n-plot: no old data or empty, using new data only [2026-10-10 12:18:55,719] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_overrepresented_sequences_plot: found old_data = False [2026-10-10 12:18:55,719] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_overrepresented_sequences_plot: no old data or empty, using new data only [2026-10-10 12:18:55,720] multiqc.plots.table_object [DEBUG ] Table key 'samples' not found in data for 'fastp_top_overrepresented_sequences_table'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,720] multiqc.plots.table_object [DEBUG ] Table key 'total_count' not found in data for 'fastp_top_overrepresented_sequences_table'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,720] multiqc.plots.table_object [DEBUG ] Table key 'total_percent' not found in data for 'fastp_top_overrepresented_sequences_table'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,720] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_top_overrepresented_sequences_table: found old_data = False [2026-10-10 12:18:55,720] multiqc.plots.plot [DEBUG ] merge_with_previous for fastp_top_overrepresented_sequences_table: no old data or empty, using new data only [2026-10-10 12:18:55,720] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_data [2026-10-10 12:18:55,720] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_duplication_plotdata [2026-10-10 12:18:55,720] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_insert_size_data [2026-10-10 12:18:55,720] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_all_data [2026-10-10 12:18:55,721] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_qual_plotdata [2026-10-10 12:18:55,721] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_gc_content_data [2026-10-10 12:18:55,722] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_n_content_data [2026-10-10 12:18:55,722] multiqc.base_module [DEBUG ] fastp: deleting attribute self.fastp_overrepresented_sequences [2026-10-10 12:18:55,722] multiqc.core.software_versions [DEBUG ] Reading software versions from config.software_versions [2026-10-10 12:18:55,736] multiqc.report [DEBUG ] Wrote data file multiqc_software_versions.txt [2026-10-10 12:18:55,736] multiqc.core.write_results [DEBUG ] Rendering plots [2026-10-10 12:18:55,749] multiqc.plots.table_object [DEBUG ] Table key 'percent_chg_meth' not found in data for 'general_stats_table'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,749] multiqc.plots.table_object [DEBUG ] Table key 'percent_chh_meth' not found in data for 'general_stats_table'. Skipping. Check for possible typos between data keys and header keys [2026-10-10 12:18:55,752] multiqc.plots.plot [DEBUG ] merge_with_previous for general_stats_table: found old_data = False [2026-10-10 12:18:55,753] multiqc.plots.plot [DEBUG ] merge_with_previous for general_stats_table: no old data or empty, using new data only [2026-10-10 12:18:55,800] multiqc.report [DEBUG ] Wrote data file multiqc_general_stats.txt [2026-10-10 12:18:55,801] multiqc.report [DEBUG ] Wrote data file multiqc_general_stats.json [2026-10-10 12:18:55,818] multiqc.core.ai [DEBUG ] Saved AI prompt to multiqc_data/llms-full.txt [2026-10-10 12:18:55,835] multiqc.core.write_results [DEBUG ] Exporting plot data to files [2026-10-10 12:18:55,836] multiqc.report [DEBUG ] Wrote data file bismark_alignment.txt [2026-10-10 12:18:55,836] multiqc.report [DEBUG ] Wrote data file bismark_deduplication.txt [2026-10-10 12:18:55,837] multiqc.report [DEBUG ] Wrote data file bismark_strand_alignment.txt [2026-10-10 12:18:55,837] multiqc.report [DEBUG ] Wrote data file bismark-methylation-dp.txt [2026-10-10 12:18:55,839] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CpG_R1.txt [2026-10-10 12:18:55,840] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHG_R1.txt [2026-10-10 12:18:55,842] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHH_R1.txt [2026-10-10 12:18:55,843] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CpG_R2.txt [2026-10-10 12:18:55,844] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHG_R2.txt [2026-10-10 12:18:55,845] multiqc.report [DEBUG ] Wrote data file bismark_mbias_CHH_R2.txt [2026-10-10 12:18:55,845] multiqc.report [DEBUG ] Wrote data file fastp_filtered_reads_plot.txt [2026-10-10 12:18:55,848] multiqc.report [DEBUG ] Wrote data file fastp-insert-size-plot.txt [2026-10-10 12:18:55,849] multiqc.report [DEBUG ] Wrote data file fastp-seq-quality-plot_Read_1_Before_filtering.txt [2026-10-10 12:18:55,851] multiqc.report [DEBUG ] Wrote data file fastp-seq-quality-plot_Read_1_After_filtering.txt [2026-10-10 12:18:55,852] multiqc.report [DEBUG ] Wrote data file fastp-seq-quality-plot_Read_2_Before_filtering.txt [2026-10-10 12:18:55,854] multiqc.report [DEBUG ] Wrote data file fastp-seq-quality-plot_Read_2_After_filtering.txt [2026-10-10 12:18:55,855] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-gc-plot_Read_1_Before_filtering.txt [2026-10-10 12:18:55,856] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-gc-plot_Read_1_After_filtering.txt [2026-10-10 12:18:55,858] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-gc-plot_Read_2_Before_filtering.txt [2026-10-10 12:18:55,859] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-gc-plot_Read_2_After_filtering.txt [2026-10-10 12:18:55,860] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-n-plot_Read_1_Before_filtering.txt [2026-10-10 12:18:55,862] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-n-plot_Read_1_After_filtering.txt [2026-10-10 12:18:55,863] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-n-plot_Read_2_Before_filtering.txt [2026-10-10 12:18:55,864] multiqc.report [DEBUG ] Wrote data file fastp-seq-content-n-plot_Read_2_After_filtering.txt [2026-10-10 12:18:55,865] multiqc.core.write_results [DEBUG ] Moving data file from '/tmp/tmpxx69qxm2/multiqc_data' to '/mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/reports/multiqc_13-wgbs_data' [2026-10-10 12:18:56,095] multiqc.core.write_results [INFO ] Data : output/13-wgbs-hapa/reports/multiqc_13-wgbs_data [2026-10-10 12:18:57,170] multiqc.core.write_results [DEBUG ] Compressing plot data [2026-10-10 12:18:57,374] multiqc.core.write_results [INFO ] Report : output/13-wgbs-hapa/reports/multiqc_13-wgbs.html [2026-10-10 12:18:57,374] multiqc.core.write_results [DEBUG ] Report HTML written to /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/reports/multiqc_13-wgbs.html