Rio1_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 26616534 lines in total
Total number of methylation call strings processed: 53233068

Final Cytosine Methylation Report
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Total number of C's analysed:	920971231

Total methylated C's in CpG context:	23422881
Total methylated C's in CHG context:	850478
Total methylated C's in CHH context:	3822332

Total C to T conversions in CpG context:	90190962
Total C to T conversions in CHG context:	156291480
Total C to T conversions in CHH context:	646393098

C methylated in CpG context:	20.6%
C methylated in non-CpG context:	0.6%