Qui4_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 21937330 lines in total
Total number of methylation call strings processed: 43874660

Final Cytosine Methylation Report
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Total number of C's analysed:	716264236

Total methylated C's in CpG context:	17508037
Total methylated C's in CHG context:	793316
Total methylated C's in CHH context:	3523238

Total C to T conversions in CpG context:	71667955
Total C to T conversions in CHG context:	122194817
Total C to T conversions in CHH context:	500576873

C methylated in CpG context:	19.6%
C methylated in non-CpG context:	0.7%