Qui1_pe.deduplicated.bam

Parameters used to extract methylation information:
Bismark Extractor Version: v0.25.1
Bismark result file: paired-end (SAM format)
Ignoring first 5 bp of Read 2
Output specified: comprehensive
No overlapping methylation calls specified
Methylation in CHG and CHH context will be merged into "non-CpG context" output


Processed 24188775 lines in total
Total number of methylation call strings processed: 48377550

Final Cytosine Methylation Report
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Total number of C's analysed:	799475338

Total methylated C's in CpG context:	19116900
Total methylated C's in CHG context:	982532
Total methylated C's in CHH context:	4381161

Total C to T conversions in CpG context:	80358495
Total C to T conversions in CHG context:	135711621
Total C to T conversions in CHH context:	558924629

C methylated in CpG context:	19.2%
C methylated in non-CpG context:	0.8%