BAMÎ@HD VN:1.0 SO:unsorted @SQ SN:Chromosome_1A LN:100680956 @SQ SN:Chromosome_2A LN:98156180 @SQ SN:Chromosome_3A LN:93095432 @SQ SN:Chromosome_4A LN:93973257 @SQ SN:Chromosome_5A LN:90413844 @SQ SN:Chromosome_6A LN:76092957 @SQ SN:Chromosome_7A LN:74165749 @SQ SN:Chromosome_8A LN:54853936 @SQ SN:Chromosome_9A LN:66796497 @SQ SN:Chromosome_10A LN:41401248 @PG ID:Bismark VN:v0.25.1 CL:"bismark --genome data/13-wgbs-genome-hapa -1 output/13-wgbs-hapa/trimmed/Rio2_R1.fq.gz -2 output/13-wgbs-hapa/trimmed/Rio2_R2.fq.gz --score_min L,0,-0.6 --parallel 8 -p 2 --temp_dir /tmp/13-wgbs-Rio2-2540784 --output_dir output/13-wgbs-hapa/bismark" @PG ID:samtools PN:samtools PP:Bismark VN:1.22.1 CL:/mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/samtools view -bSh - @PG ID:samtools.1 PN:samtools PP:samtools VN:1.22.1 CL:/mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/samtools view -h /mmfs1/gscratch/scrubbed/sr320/github/project-ostrea-chil/output/13-wgbs-hapa/bismark/Rio2_R1.fq.gz.temp.1_bismark_bt2_pe.bam @PG ID:samtools.2 PN:samtools PP:samtools.1 VN:1.22.1 CL:/mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/samtools view --threads 4 -bSh - @PG ID:samtools.3 PN:samtools PP:samtools.2 VN:1.22.1 CL:/mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/samtools view -h --threads 1 output/13-wgbs-hapa/bismark/Rio2_pe.bam @PG ID:samtools.4 PN:samtools PP:samtools.3 VN:1.22.1 CL:/mmfs1/gscratch/srlab/sr320/miniforge3/envs/myflow/bin/samtools view -bS --threads 1 - Chromosome_1AüDChromosome_2A”¾ÙChromosome_3A†ŒChromosome_4A ë™Chromosome_5A›cChromosome_6A‰Chromosome_7Aõ­kChromosome_8A0EChromosome_9AÑ;ûChromosome_10A »w