Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    9863760 C>T  Pum=0.556  Qui=0.0  Rio=0.682
    9863798 C>T  Pum=0.5  Qui=0.0  Rio=0.714

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        1   10.0
Qui1     Qui              0        0    4.0
Qui2     Qui              0        0    9.0
Qui3     Qui    66.7      3        0    9.0
Qui4     Qui     0.0      1        0    7.0
Rio1     Rio     0.0      2        1    7.0
Rio2     Rio   100.0      1        1    5.0
Rio3     Rio              0        1    7.0
Rio4     Rio              0        1    6.0