Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 14
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 11  [CpG-destroying: 8]
    9863295 C>T  Pum=0.714  Qui=0.0  Rio=0.515
    9863413 C>T  Pum=0.0  Qui=0.0  Rio=0.545
    9863420 C>T  Pum=0.571  Qui=0.0  Rio=0.548
    9863429 C>T  Pum=0.0  Qui=0.0  Rio=0.516
    9863650 C>T  Pum=0.0  Qui=0.0  Rio=0.641
    9863657 T>C  Pum=0.6  Qui=0.0  Rio=0.605
    9863671 T>A  Pum=0.0  Qui=0.0  Rio=0.525
    9863679 T>A  Pum=0.667  Qui=0.0  Rio=0.605
    9863760 C>T  Pum=0.556  Qui=0.0  Rio=0.682
    9863798 C>T  Pum=0.5  Qui=0.0  Rio=0.714
    9863851 C>T  Pum=0.0  Qui=0.0  Rio=0.56

16 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    84.0     25        3    8.2
Qui1     Qui    91.7     24        0    5.6
Qui2     Qui    85.7      7        0    7.7
Qui3     Qui    64.0     25        0    9.2
Qui4     Qui    82.6     23        0    7.7
Rio1     Rio    32.3     31        5    9.9
Rio2     Rio    81.8     11        4    6.6
Rio3     Rio    50.0      6        6    9.2
Rio4     Rio    30.8     13        6    7.0