Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

16 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     72        0    8.0
Qui1     Qui    45.3     86        0    8.0
Qui2     Qui    33.3     57        0    5.7
Qui3     Qui    41.8     98        0    8.2
Qui4     Qui    33.3     30        0    4.2
Rio1     Rio    52.4     21        0    6.1
Rio2     Rio    54.8     31        0    5.3
Rio3     Rio    59.1     44        0    6.7
Rio4     Rio    71.4     35        0    5.8