Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

18 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.0     25        0    3.0
Qui1     Qui     0.0     52        0    5.4
Qui2     Qui     1.4     70        0    5.6
Qui3     Qui     1.6     63        0    5.7
Qui4     Qui     0.0     51        0    6.3
Rio1     Rio    30.3     66        0    7.1
Rio2     Rio    39.6     48        0    4.3
Rio3     Rio     8.3     24        0    3.1
Rio4     Rio    11.1     81        0    6.2