Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

43 CpGs in target; 24 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    57.6    184        0    6.5
Qui1     Qui    44.9    225        0    8.0
Qui2     Qui    56.1    212        0    9.5
Qui3     Qui    69.5    239        1    9.8
Qui4     Qui    67.0    103        0    3.8
Rio1     Rio     0.4    231        0    9.2
Rio2     Rio     0.0    142        2    7.0
Rio3     Rio     0.0    129        0    6.2
Rio4     Rio     0.8    250        1    9.5