Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    61.0     77        0    8.9
Qui1     Qui    33.9     62        0    5.7
Qui2     Qui    64.3     70        0    8.7
Qui3     Qui    52.2     46        0    6.1
Qui4     Qui    92.0     25        0    4.1
Rio1     Rio     0.0     61        0    7.0
Rio2     Rio     2.7     74        0    8.4
Rio3     Rio     0.0     63        0    6.6
Rio4     Rio     0.0     67        1    7.9