Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.6     82        0    7.6
Qui1     Qui    54.5     66        1    6.8
Qui2     Qui    35.9     78        0    6.4
Qui3     Qui    37.0     73        0    6.4
Qui4     Qui    57.1     21        0    2.0
Rio1     Rio     0.0     57        0    6.0
Rio2     Rio     0.0     33        0    5.2
Rio3     Rio     0.0     65        0    4.8
Rio4     Rio     0.0     43        0    4.8