Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    28.0     50        0    9.5
Qui1     Qui    31.8     44        0    8.0
Qui2     Qui    34.2     76        0   13.7
Qui3     Qui    36.5     85        0   11.8
Qui4     Qui    75.9     29        0    4.2
Rio1     Rio     0.0     60        0    8.0
Rio2     Rio     0.0     65        0    8.1
Rio3     Rio     3.6     56        0    6.3
Rio4     Rio     1.6     61        0    7.6