Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0      5        0    6.0
Qui1     Qui    63.6     11        0   12.0
Qui2     Qui    56.2     16        0   17.0
Qui3     Qui    35.3     17        0   18.0
Qui4     Qui    44.4      9        0   10.0
Rio1     Rio     0.0     14        0   14.0
Rio2     Rio    12.5      8        0    8.5
Rio3     Rio     0.0     13        0   13.5
Rio4     Rio     0.0     10        0   11.5