Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

36 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.9    236        0    7.0
Qui1     Qui    60.2    186        0    5.4
Qui2     Qui    59.9    269        0    8.4
Qui3     Qui    42.0    281        0    8.9
Qui4     Qui    71.2    146        0    4.6
Rio1     Rio     0.4    224        0    6.1
Rio2     Rio     2.3    175        0    5.7
Rio3     Rio     2.2    179        0    4.7
Rio4     Rio     0.0    217        0    6.6