Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

14 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0    7.2
Qui1     Qui    83.3     12        1    8.8
Qui2     Qui    50.0      6        1    5.1
Qui3     Qui    20.0     10        0   10.0
Qui4     Qui    80.0     15        1    7.8
Rio1     Rio   100.0      5        0    8.1
Rio2     Rio              0        0    6.8
Rio3     Rio    76.5     17        0    6.5
Rio4     Rio    85.7      7        0    8.8