Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 24
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    61951861 G>T  Pum=  Qui=0.5  Rio=0.0

11 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     15        0    4.1
Qui1     Qui    68.6     51        1    8.8
Qui2     Qui    39.5     43        0    8.0
Qui3     Qui    53.1     49        0    9.2
Qui4     Qui    47.4     38        1    6.9
Rio1     Rio    91.4     58        0    7.0
Rio2     Rio    92.0     50        0    6.9
Rio3     Rio    92.9     42        0    6.8
Rio4     Rio    82.5     40        0    6.6