Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.4      9        0   17.0
Qui1     Qui    33.3      9        0   20.0
Qui2     Qui    25.0      4        0   19.5
Qui3     Qui    15.4     13        0   22.0
Qui4     Qui    33.3     12        0   15.0
Rio1     Rio     0.0      8        0   17.5
Rio2     Rio     0.0      4        0   10.0
Rio3     Rio     0.0      3        0    9.0
Rio4     Rio     0.0      2        0   11.0